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Event-based criteria in GT-STAF information indices: Theory, exploratory diversity analysis and QSPR applications

  • S. J. Barigye
  • , Y. Marrero-Ponce*
  • , Y. Martínez López
  • , O. Martínez Santiago
  • , F. Torrens
  • , R. García Domenech
  • , J. Galvez
  • *Corresponding author for this work
  • Universidad Central Marta Abreu de Las Villas
  • Universitat de València
  • Camagüey University

Research output: Contribution to journalArticlepeer-review

21 Scopus citations

Abstract

Versatile event-based approaches for the definition of novel information theory-based indices (IFIs) are presented. An event in this context is the criterion followed in the "discovery" of molecular substructures, which in turn serve as basis for the construction of the generalized incidence and relations frequency matrices, Q and F, respectively. From the resultant F, Shannon's, mutual, conditional and joint entropy-based IFIs are computed. In previous reports, an event named connected subgraphs was presented. The present study is an extension of this notion, in which we introduce other events, namely: terminal paths, vertex path incidence, quantum subgraphs, walks of length k, Sach's subgraphs, MACCs, E-state and substructure fingerprints and, finally, Ghose and Crippen atom-types for hydrophobicity and refractivity. Moreover, we define magnitude-based IFIs, introducing the use of the magnitude criterion in the definition of mutual, conditional and joint entropy-based IFIs. We also discuss the use of information-theoretic parameters as a measure of the dissimilarity of codified structural information of molecules. Finally, a comparison of the statistics for QSPR models obtained with the proposed IFIs and DRAGON's molecular descriptors for two physicochemical properties log P and log K of 34 derivatives of 2-furylethylenes demonstrates similar to better predictive ability than the latter.

Original languageEnglish
Pages (from-to)3-34
Number of pages32
JournalSAR and QSAR in Environmental Research
Volume24
Issue number1
DOIs
StatePublished - Jan 2013
Externally publishedYes

Keywords

  • GT-STAF
  • QSPR
  • Shannon's, mutual
  • TOMOCOMD-CARDD
  • cluster analysis
  • conditional and joint entropy
  • event
  • magnitude criterion

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