Evolutionary genomics of oceanic island radiations

José Cerca; Darko D. Cotoras; Vanessa C. Bieker; Rishi De-Kayne; Pablo Vargas; Mario Fernández-Mazuecos; Julia López-Delgado; Oliver White; Martin Stervander; Anthony J. Geneva; Juan Ernesto Guevara Andino; Joana Isabel Meier; Lizzie Roeble; Baptiste Brée; Jairo Patiño; Juan M. Guayasamin; María de Lourdes Torres; Hugo Valdebenito; María del Rosario Castañeda; Jaime A. Chaves; Patricia Jaramillo Díaz; Luis Valente; Matthew L. Knope; Jonathan P. Price; Loren H. Rieseberg; Bruce G. Baldwin; Brent C. Emerson; Gonzalo Rivas-Torres; Rosemary Gillespie; Michael D. Martin

doi:10.1016/j.tree.2023.02.003

Evolutionary genomics of oceanic island radiations

José Cerca^*
, Darko D. Cotoras
, Vanessa C. Bieker
, Rishi De-Kayne
, Pablo Vargas
, Mario Fernández-Mazuecos
, Julia López-Delgado
, Oliver White
, Martin Stervander
, Anthony J. Geneva
, Juan Ernesto Guevara Andino
, Joana Isabel Meier
, Lizzie Roeble
, Baptiste Brée
, Jairo Patiño
, Juan M. Guayasamin
, María de Lourdes Torres
, Hugo Valdebenito
, María del Rosario Castañeda
, Jaime A. Chaves

Patricia Jaramillo Díaz, Luis Valente, Matthew L. Knope, Jonathan P. Price, Loren H. Rieseberg, Bruce G. Baldwin, Brent C. Emerson, Gonzalo Rivas-Torres, Rosemary Gillespie, Michael D. Martin

^*Corresponding author for this work

Norwegian University of Science and Technology
University of Oslo
Senckenberg Gesellschaft für Naturforschung
California Academy of Sciences
EaStCHEM School of Chemistry, University of Edinburgh
Biodiversity and Conservation
Universidad Autónoma de Madrid
University of Leeds
The Natural History Museum, London
Rutgers - The State University of New Jersey, Camden
Universidad de las Americas - Ecuador
University of Cambridge
Naturalis Biodiversity Center
University of Groningen
Université de Pau et des Pays de l'Adour (UPPA)
Instituto de Productos Naturales y Agrobiología (IPNA-CSIC)
Universidad ICESI
San Francisco State University
Charles Darwin Foundation
University of Malaga
University of Hawai'i at Hilo
University of British Columbia
University of California at Berkeley
Department of Environmental Science, Policy, and Management

Research output: Contribution to journal › Review article › peer-review

41 Scopus citations

Abstract

A recurring feature of oceanic archipelagos is the presence of adaptive radiations that generate endemic, species-rich clades that can offer outstanding insight into the links between ecology and evolution. Recent developments in evolutionary genomics have contributed towards solving long-standing questions at this interface. Using a comprehensive literature search, we identify studies spanning 19 oceanic archipelagos and 110 putative adaptive radiations, but find that most of these radiations have not yet been investigated from an evolutionary genomics perspective. Our review reveals different gaps in knowledge related to the lack of implementation of genomic approaches, as well as undersampled taxonomic and geographic areas. Filling those gaps with the required data will help to deepen our understanding of adaptation, speciation, and other evolutionary processes.

Original language	English
Pages (from-to)	631-642
Number of pages	12
Journal	Trends in Ecology and Evolution
Volume	38
Issue number	7
DOIs	https://doi.org/10.1016/j.tree.2023.02.003
State	Published - Jul 2023

Keywords

convergent
diversification
ecology
insular
parallel
Biological Evolution
Genetic Speciation
Genomics
Ecology
Phylogeny

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10.1016/j.tree.2023.02.003

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Cerca, J., Cotoras, D. D., Bieker, V. C., De-Kayne, R., Vargas, P., Fernández-Mazuecos, M., López-Delgado, J., White, O., Stervander, M., Geneva, A. J., Guevara Andino, J. E., Meier, J. I., Roeble, L., Brée, B., Patiño, J., Guayasamin, J. M., Torres, M. D. L., Valdebenito, H., Castañeda, M. D. R., ... Martin, M. D. (2023). Evolutionary genomics of oceanic island radiations. Trends in Ecology and Evolution, 38(7), 631-642. https://doi.org/10.1016/j.tree.2023.02.003

@article{d4b74ad959c7431789013c49a450d38e,

title = "Evolutionary genomics of oceanic island radiations",

abstract = "A recurring feature of oceanic archipelagos is the presence of adaptive radiations that generate endemic, species-rich clades that can offer outstanding insight into the links between ecology and evolution. Recent developments in evolutionary genomics have contributed towards solving long-standing questions at this interface. Using a comprehensive literature search, we identify studies spanning 19 oceanic archipelagos and 110 putative adaptive radiations, but find that most of these radiations have not yet been investigated from an evolutionary genomics perspective. Our review reveals different gaps in knowledge related to the lack of implementation of genomic approaches, as well as undersampled taxonomic and geographic areas. Filling those gaps with the required data will help to deepen our understanding of adaptation, speciation, and other evolutionary processes.",

keywords = "convergent, diversification, ecology, insular, parallel, Biological Evolution, Genetic Speciation, Genomics, Ecology, Phylogeny",

author = "Jos{\'e} Cerca and Cotoras, \{Darko D.\} and Bieker, \{Vanessa C.\} and Rishi De-Kayne and Pablo Vargas and Mario Fern{\'a}ndez-Mazuecos and Julia L{\'o}pez-Delgado and Oliver White and Martin Stervander and Geneva, \{Anthony J.\} and \{Guevara Andino\}, \{Juan Ernesto\} and Meier, \{Joana Isabel\} and Lizzie Roeble and Baptiste Br{\'e}e and Jairo Pati{\~n}o and Guayasamin, \{Juan M.\} and Torres, \{Mar{\'i}a de Lourdes\} and Hugo Valdebenito and Casta{\~n}eda, \{Mar{\'i}a del Rosario\} and Chaves, \{Jaime A.\} and D{\'i}az, \{Patricia Jaramillo\} and Luis Valente and Knope, \{Matthew L.\} and Price, \{Jonathan P.\} and Rieseberg, \{Loren H.\} and Baldwin, \{Bruce G.\} and Emerson, \{Brent C.\} and Gonzalo Rivas-Torres and Rosemary Gillespie and Martin, \{Michael D.\}",

year = "2023",

month = jul,

doi = "10.1016/j.tree.2023.02.003",

language = "Ingl{\'e}s",

volume = "38",

pages = "631--642",

journal = "Trends in Ecology and Evolution",

issn = "0169-5347",

publisher = "Elsevier Ltd",

number = "7",

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Cerca, J, Cotoras, DD, Bieker, VC, De-Kayne, R, Vargas, P, Fernández-Mazuecos, M, López-Delgado, J, White, O, Stervander, M, Geneva, AJ, Guevara Andino, JE, Meier, JI, Roeble, L, Brée, B, Patiño, J, Guayasamin, JM , Torres, MDL, Valdebenito, H, Castañeda, MDR, Chaves, JA, Díaz, PJ, Valente, L, Knope, ML, Price, JP, Rieseberg, LH, Baldwin, BG, Emerson, BC, Rivas-Torres, G, Gillespie, R & Martin, MD 2023, 'Evolutionary genomics of oceanic island radiations', Trends in Ecology and Evolution, vol. 38, no. 7, pp. 631-642. https://doi.org/10.1016/j.tree.2023.02.003

TY - JOUR

T1 - Evolutionary genomics of oceanic island radiations

AU - Cerca, José

AU - Cotoras, Darko D.

AU - Bieker, Vanessa C.

AU - De-Kayne, Rishi

AU - Vargas, Pablo

AU - Fernández-Mazuecos, Mario

AU - López-Delgado, Julia

AU - White, Oliver

AU - Stervander, Martin

AU - Geneva, Anthony J.

AU - Guevara Andino, Juan Ernesto

AU - Meier, Joana Isabel

AU - Roeble, Lizzie

AU - Brée, Baptiste

AU - Patiño, Jairo

AU - Guayasamin, Juan M.

AU - Torres, María de Lourdes

AU - Valdebenito, Hugo

AU - Castañeda, María del Rosario

AU - Chaves, Jaime A.

AU - Díaz, Patricia Jaramillo

AU - Valente, Luis

AU - Knope, Matthew L.

AU - Price, Jonathan P.

AU - Rieseberg, Loren H.

AU - Baldwin, Bruce G.

AU - Emerson, Brent C.

AU - Rivas-Torres, Gonzalo

AU - Gillespie, Rosemary

AU - Martin, Michael D.

PY - 2023/7

Y1 - 2023/7

N2 - A recurring feature of oceanic archipelagos is the presence of adaptive radiations that generate endemic, species-rich clades that can offer outstanding insight into the links between ecology and evolution. Recent developments in evolutionary genomics have contributed towards solving long-standing questions at this interface. Using a comprehensive literature search, we identify studies spanning 19 oceanic archipelagos and 110 putative adaptive radiations, but find that most of these radiations have not yet been investigated from an evolutionary genomics perspective. Our review reveals different gaps in knowledge related to the lack of implementation of genomic approaches, as well as undersampled taxonomic and geographic areas. Filling those gaps with the required data will help to deepen our understanding of adaptation, speciation, and other evolutionary processes.

AB - A recurring feature of oceanic archipelagos is the presence of adaptive radiations that generate endemic, species-rich clades that can offer outstanding insight into the links between ecology and evolution. Recent developments in evolutionary genomics have contributed towards solving long-standing questions at this interface. Using a comprehensive literature search, we identify studies spanning 19 oceanic archipelagos and 110 putative adaptive radiations, but find that most of these radiations have not yet been investigated from an evolutionary genomics perspective. Our review reveals different gaps in knowledge related to the lack of implementation of genomic approaches, as well as undersampled taxonomic and geographic areas. Filling those gaps with the required data will help to deepen our understanding of adaptation, speciation, and other evolutionary processes.

KW - convergent

KW - diversification

KW - ecology

KW - insular

KW - parallel

KW - Biological Evolution

KW - Genetic Speciation

KW - Genomics

KW - Ecology

KW - Phylogeny

UR - https://www.scopus.com/pages/publications/85149330857

U2 - 10.1016/j.tree.2023.02.003

DO - 10.1016/j.tree.2023.02.003

M3 - Artículo de revisión

C2 - 36870806

AN - SCOPUS:85149330857

SN - 0169-5347

VL - 38

SP - 631

EP - 642

JO - Trends in Ecology and Evolution

JF - Trends in Ecology and Evolution

IS - 7

ER -

Evolutionary genomics of oceanic island radiations

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Keywords

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