Metagenome of a bronchoalveolar lavage fluid sample from a confirmed COVID-19 case in quito, ecuador, obtained using oxford nanopore MinION technology

Sully Márquez; Belén Prado-Vivar; Juan José Guadalupe; Bernardo Gutierrez; Mónica Becerra-Wong; Manuel Jibaja; Milton Tobar; Verónica Barragán; Patricio Rojas-Silva; Josefina Coloma; Gabriel Trueba; Michelle Grunauer; Paúl Cárdenas

doi:10.1128/MRA.00996-20

Metagenome of a bronchoalveolar lavage fluid sample from a confirmed COVID-19 case in quito, ecuador, obtained using oxford nanopore MinION technology

Sully Márquez
, Belén Prado-Vivar
, Juan José Guadalupe
, Bernardo Gutierrez
, Mónica Becerra-Wong
, Manuel Jibaja
, Milton Tobar
, Verónica Barragán
, Patricio Rojas-Silva
, Josefina Coloma
, Gabriel Trueba
, Michelle Grunauer
, Paúl Cárdenas^*

^*Corresponding author for this work

Universidad San Francisco de Quito
University of Oxford
Hospital Eugenio Espejo
University of California at Berkeley
Hospital de los Valles

Research output: Contribution to journal › Article › peer-review

2 Scopus citations

Abstract

We report the metagenome analysis of a bronchoalveolar lavage (BAL) fluid sample from a confirmed coronavirus disease 2019 (COVID-19) case in Quito, Ecuador. Sequencing was performed using MinION technology.

Original language	English
Article number	e00996-20
Journal	Genome Announcements
Volume	9
Issue number	41
DOIs	https://doi.org/10.1128/MRA.00996-20
State	Published - Oct 2020

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Márquez, S., Prado-Vivar, B., Guadalupe, J. J., Gutierrez, B., Becerra-Wong, M., Jibaja, M., Tobar, M., Barragán, V., Rojas-Silva, P., Coloma, J., Trueba, G., Grunauer, M., & Cárdenas, P. (2020). Metagenome of a bronchoalveolar lavage fluid sample from a confirmed COVID-19 case in quito, ecuador, obtained using oxford nanopore MinION technology. Genome Announcements, 9(41), Article e00996-20. https://doi.org/10.1128/MRA.00996-20

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title = "Metagenome of a bronchoalveolar lavage fluid sample from a confirmed COVID-19 case in quito, ecuador, obtained using oxford nanopore MinION technology",

abstract = "We report the metagenome analysis of a bronchoalveolar lavage (BAL) fluid sample from a confirmed coronavirus disease 2019 (COVID-19) case in Quito, Ecuador. Sequencing was performed using MinION technology.",

author = "Sully M{\'a}rquez and Bel{\'e}n Prado-Vivar and Guadalupe, \{Juan Jos{\'e}\} and Bernardo Gutierrez and M{\'o}nica Becerra-Wong and Manuel Jibaja and Milton Tobar and Ver{\'o}nica Barrag{\'a}n and Patricio Rojas-Silva and Josefina Coloma and Gabriel Trueba and Michelle Grunauer and Pa{\'u}l C{\'a}rdenas",

note = "Publisher Copyright: Copyright {\textcopyright} 2020 M{\'a}rquez et al.",

year = "2020",

month = oct,

doi = "10.1128/MRA.00996-20",

language = "Ingl{\'e}s",

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Márquez, S, Prado-Vivar, B, Guadalupe, JJ, Gutierrez, B, Becerra-Wong, M, Jibaja, M, Tobar, M, Barragán, V , Rojas-Silva, P, Coloma, J, Trueba, G , Grunauer, M & Cárdenas, P 2020, 'Metagenome of a bronchoalveolar lavage fluid sample from a confirmed COVID-19 case in quito, ecuador, obtained using oxford nanopore MinION technology', Genome Announcements, vol. 9, no. 41, e00996-20. https://doi.org/10.1128/MRA.00996-20

TY - JOUR

T1 - Metagenome of a bronchoalveolar lavage fluid sample from a confirmed COVID-19 case in quito, ecuador, obtained using oxford nanopore MinION technology

AU - Márquez, Sully

AU - Prado-Vivar, Belén

AU - Guadalupe, Juan José

AU - Gutierrez, Bernardo

AU - Becerra-Wong, Mónica

AU - Jibaja, Manuel

AU - Tobar, Milton

AU - Barragán, Verónica

AU - Rojas-Silva, Patricio

AU - Coloma, Josefina

AU - Trueba, Gabriel

AU - Grunauer, Michelle

AU - Cárdenas, Paúl

PY - 2020/10

Y1 - 2020/10

N2 - We report the metagenome analysis of a bronchoalveolar lavage (BAL) fluid sample from a confirmed coronavirus disease 2019 (COVID-19) case in Quito, Ecuador. Sequencing was performed using MinION technology.

AB - We report the metagenome analysis of a bronchoalveolar lavage (BAL) fluid sample from a confirmed coronavirus disease 2019 (COVID-19) case in Quito, Ecuador. Sequencing was performed using MinION technology.

UR - https://www.scopus.com/pages/publications/85094619082

U2 - 10.1128/MRA.00996-20

DO - 10.1128/MRA.00996-20

M3 - Artículo

AN - SCOPUS:85094619082

SN - 2169-8287

VL - 9

JO - Genome Announcements

JF - Genome Announcements

IS - 41

M1 - e00996-20

ER -

Metagenome of a bronchoalveolar lavage fluid sample from a confirmed COVID-19 case in quito, ecuador, obtained using oxford nanopore MinION technology

Abstract

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