TY - JOUR
T1 - Applying pattern recognition methods plus quantum and physico-chemical molecular descriptors to analyze the anabolic activity of structurally diverse steroids
AU - Alvarez-Ginarte, Yoanna María
AU - Marrero-Ponce, Yovani
AU - Ruiz-GarcíA, José Alberto
AU - Montero-Cabrera, Luis Alberto
AU - De La Vega, Jose Manuel García
AU - Marin, Pedro Noheda
AU - Crespo-Otero, Rachel
AU - Zaragoza, Francisco Torrens
AU - García-Domenech, Ramón
PY - 2008/2
Y1 - 2008/2
N2 - The great cost associated with the development of new anabolic-androgenic steroid (AASs) makes necessary the development of computational methods that shorten the drug discovery pipeline. Toward this end, quantum, and physicochemical molecular descriptors, plus linear discriminant analysis (LDA) were used to analyze the anabolic/androgenic activity of structurally diverse steroids and to discover novel AASs, as well as also to give a structural interpretation of their anabolic-androgenic ratio (AAR). The obtained models are able to correctly classify 91.67% (86.27%) of the AASs in the training (test) sets, respectively. The results of predictions on the 10% full-out cross-validation test also evidence the robustness of the obtained model. Moreover, these classification functions are applied to an "in house" library of chemicals, to find novel AASs. Two new AASs are synthesized and tested for in vivo activity. Although both AASs are less active than some commercially AASs, this result leaves a door open to a virtual variational study of the structure of the two compounds, to improve their biological activity. The LDA-assisted QSAR models presented here, could significantly reduce the number of synthesized and tested AASs, as well as could increase the chance of finding new chemical entities with higher AAR.
AB - The great cost associated with the development of new anabolic-androgenic steroid (AASs) makes necessary the development of computational methods that shorten the drug discovery pipeline. Toward this end, quantum, and physicochemical molecular descriptors, plus linear discriminant analysis (LDA) were used to analyze the anabolic/androgenic activity of structurally diverse steroids and to discover novel AASs, as well as also to give a structural interpretation of their anabolic-androgenic ratio (AAR). The obtained models are able to correctly classify 91.67% (86.27%) of the AASs in the training (test) sets, respectively. The results of predictions on the 10% full-out cross-validation test also evidence the robustness of the obtained model. Moreover, these classification functions are applied to an "in house" library of chemicals, to find novel AASs. Two new AASs are synthesized and tested for in vivo activity. Although both AASs are less active than some commercially AASs, this result leaves a door open to a virtual variational study of the structure of the two compounds, to improve their biological activity. The LDA-assisted QSAR models presented here, could significantly reduce the number of synthesized and tested AASs, as well as could increase the chance of finding new chemical entities with higher AAR.
KW - Anabolic-androgenic ratio
KW - Anabolic-androgenic steroid
KW - LDA-assisted QSAR model
KW - Quantum and physicochemical molecular descriptor
KW - Virtual screening
UR - http://www.scopus.com/inward/record.url?scp=38349115969&partnerID=8YFLogxK
U2 - 10.1002/jcc.20745
DO - 10.1002/jcc.20745
M3 - Artículo
C2 - 17639502
AN - SCOPUS:38349115969
SN - 0192-8651
VL - 29
SP - 317
EP - 333
JO - Journal of Computational Chemistry
JF - Journal of Computational Chemistry
IS - 3
ER -