TY - CHAP
T1 - Retrained classification of tyrosinase inhibitors and "In Silico" potency estimation by using atom-type linear indices
T2 - A powerful tool for speed up the discovery of leads
AU - Casañola-Martín, Gerardo M.
AU - García-Domenech, Ramón
AU - Khan, Mahmud Tareq Hassan
AU - Torrens, Francisco
AU - Le-Thi-Thu, Huong
AU - Rescigno, Antonio
AU - Marrero-Ponce, Yovani
AU - Abad, Concepción
N1 - Publisher Copyright:
© 2013 by IGI Global. All rights reserved.
PY - 2013/5/31
Y1 - 2013/5/31
N2 - In this paper, the authors present an effort to increase the applicability domain (AD) by means of retraining models using a database of 701 great dissimilar molecules presenting anti-tyrosinase activity and 728 drugs with other uses. Atom-based linear indices and best subset linear discriminant analysis (LDA) were used to develop individual classification models. Eighteen individual classification-based QSAR models for the tyrosinase inhibitory activity were obtained with global accuracy varying from 88.15-91.60% in the training set and values of Matthews correlation coefficients (C) varying from 0.76-0.82. The external validation set shows globally classifications above 85.99% and 0.72 for C. All individual models were validated and fulfilled by OECD principles. A brief analysis of AD for the training set of 478 compounds and the new active compounds included in the re-training was carried out. Various assembled multiclassifier systems contained eighteen models using different selection criterions were obtained, which provide possibility of select the best strategy for particular problem. The various assembled multiclassifier systems also estimated the potency of active identified compounds. Eighteen validated potency models by OECD principles were used.
AB - In this paper, the authors present an effort to increase the applicability domain (AD) by means of retraining models using a database of 701 great dissimilar molecules presenting anti-tyrosinase activity and 728 drugs with other uses. Atom-based linear indices and best subset linear discriminant analysis (LDA) were used to develop individual classification models. Eighteen individual classification-based QSAR models for the tyrosinase inhibitory activity were obtained with global accuracy varying from 88.15-91.60% in the training set and values of Matthews correlation coefficients (C) varying from 0.76-0.82. The external validation set shows globally classifications above 85.99% and 0.72 for C. All individual models were validated and fulfilled by OECD principles. A brief analysis of AD for the training set of 478 compounds and the new active compounds included in the re-training was carried out. Various assembled multiclassifier systems contained eighteen models using different selection criterions were obtained, which provide possibility of select the best strategy for particular problem. The various assembled multiclassifier systems also estimated the potency of active identified compounds. Eighteen validated potency models by OECD principles were used.
UR - http://www.scopus.com/inward/record.url?scp=84944517803&partnerID=8YFLogxK
U2 - 10.4018/978-1-4666-4010-8.ch021
DO - 10.4018/978-1-4666-4010-8.ch021
M3 - Capítulo
AN - SCOPUS:84944517803
SN - 1466640103
SN - 9781466640108
SP - 322
EP - 427
BT - Methodologies and Applications for Chemoinformatics and Chemical Engineering
PB - IGI Global
ER -